Genetic contribution of FUS to frontotemporal lobar degeneration
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Abstract
Background: Recently, the FUS gene was identified as a new causal gene for amyotrophic lateral sclerosis (ALS) in ∼4% of patients with familial ALS. Since ALS and frontotemporal lobar degeneration (FTLD) are part of a clinical, pathologic, and genetic disease spectrum, we investigated a potential role of FUS in FTLD.
Methods: We performed mutational analysis of FUS in 122 patients with FTLD and 15 patients with FTLD-ALS, as well as in 47 patients with ALS. Mutation screening was performed by sequencing of PCR amplicons of the 15 FUS exons.
Results: We identified 1 patient with FTLD with a novel missense mutation, M254V, that was absent in 638 control individuals. In silico analysis predicted this amino acid substitution to be pathogenic. The patient did not have a proven family history of neurodegenerative brain disease. Further, we observed the known R521H mutation in 1 patient with ALS. No FUS mutations were detected in the patients with FTLD-ALS. While insertions/deletions of 2 glycines (G) were suggested to be pathogenic in the initial FUS reports, we observed an identical GG-deletion in 2 healthy individuals and similar G-insertions/deletions in 4 other control individuals, suggesting that G-insertions/deletions within this G-rich region may be tolerated.
Conclusions: In a first analysis of FUS in patients with frontotemporal lobar degeneration (FTLD), we identified a novel FUS missense mutation, M254V, in 1 patient with pure FTLD. At this point, the biologic relevance of this mutation remains elusive. Screening of additional FTLD patient cohorts will be needed to further elucidate the contribution of FUS mutations to FTLD pathogenesis.
Glossary
- ALS=
- amyotrophic lateral sclerosis;
- FTD=
- frontotemporal dementia;
- FTLD=
- frontotemporal lobar degeneration;
- TDP=
- TAR DNA-binding protein.
Frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS) are 2 related, ultimately fatal neurodegenerative disorders. FTLD is a focal dementia syndrome affecting primarily the frontal and temporal lobes of the brain whereas ALS is predominantly a disease of the lower and upper motor neurons. Although distinct identities, accumulating evidence supports the view that both diseases are part of a clinical, pathologic, and genetic spectrum. In up to 50% of patients with ALS, mild disturbances of executive functions can be observed related to frontal lobe dysfunction, and in ∼10% cognitive and behavioral changes are present that meet the criteria of FTLD.1,2 Conversely, a proportion of patients with FTLD will develop muscle wasting and spasticity in later stages of the disease.3 At neuropathologic examination, over half of FTLD patients' brains show pathologic aggregates of ubiquitinated TAR DNA-binding protein 43 (TDP-43) in cortical neurons of affected regions (FTLD-TDP).4–6 Similarly, for the majority (∼90%) of patients with ALS, inclusions of TDP-43 were detected in degenerating motor neurons.5,7 The link between FTLD and ALS is also supported by genetic evidence. Several families have been reported in which affected family members manifest FTLD, ALS, or both, and showed linkage to a region on chromosome 9p13-21.8–10
Recently a new causal gene was identified for ALS. Mutations in the Fused in Sarcoma gene (FUS) were found segregating with ALS in families linked to chromosome 16. Two independent articles described a total of 15 different FUS mutations in 26 unrelated ALS families (∼4% of familial ALS).11,12 Twelve were missense mutations, clustering in the C-terminal region of the protein encoded by exons 14 and 15. In addition, 1 missense mutation and a deletion and insertion of 2 glycine (G) residues were identified in the upstream G-rich region of FUS in exons 5 and 6 (figure). The clinical presentation of FUS mutations was classic ALS, with a mean age at onset of 46 years and mean disease duration of 33 months.
The FUS protein shows remarkable functional and pathologic similarities with TDP-43.13,14 Both FUS and TDP-43 are nuclear proteins involved in RNA and DNA metabolism. The neuropathologic examination of FUS mutation carriers revealed inclusions of FUS protein within the cytoplasm of affected motor neurons. Cellular expression studies further showed subcellular mislocalization and cytoplasmic retention of mutant FUS protein.11,12 These observations are similar to the aberrant TDP-43 processing seen in TDP-43 proteinopathies.5,6 Following the identification of TDP-43 as a major pathologic protein in both ALS and FTLD, pathogenic mutations were detected in the encoding TARDBP gene in patients with ALS,15,16 establishing a primary genetic role for TARDBP in ALS. Whereas the initial mutation screens of TARDBP in FTLD were negative,17,18 rare TARDBP variations have now also been identified in patients with FTLD-ALS and FTLD in the absence of ALS19–21 (AD & FTD Mutation Database, http://www.molgen.ua.ac.be/FTDMutations).
The discovery of FUS as an important disease gene in ALS prompted us to investigate a possible role for FUS in FTLD and within the FTLD-ALS spectrum. We set up a mutation screen of FUS in a series of patients with FTLD (n = 122), ALS (n = 47), and concurrent FTLD-ALS (n = 15).
METHODS
Study population.
Included in this study were 122 patients with FTLD, 47 patients with ALS, and 15 patients with FTLD-ALS. The patients were ascertained between 1998 and 2009 within the framework of 2 ongoing prospective clinical studies of dementia conducted at the memory clinics and neurology departments of the ZNA Middelheim, Antwerpen, and the University Hospitals, Leuven, in Belgium. All patients were evaluated following a standard protocol including neurologic examination, neuropsychological testing, biochemical analysis, EEG, and neuroimaging.22 Clinical diagnosis was reached in consensus by 2 neurologists according to the Lund and Manchester group criteria for FTLD3 and the revised El Escorial criteria for ALS.23 In the ALS study population, additional patients were included who had initially been referred to our Molecular Diagnostic Unit for genetic testing. Of the 122 patients with FTLD, 96 were diagnosed with frontotemporal dementia (FTD), 11 with progressive nonfluent aphasia, and 10 with semantic dementia. For 5 patients, the FTLD subtype remained unspecified. Seven patients with FTLD were diagnosed pathologically with FTLD-TDP, 1 with FTLD-tau, 2 with FTLD-U, 2 with FTLD-UPS, and 1 with FTLD-NI, conforming with the new consensus recommendations for nomenclature of FTLD neuropathologic subtypes.24 One patient with FTLD-ALS came to autopsy with FTLD-TDP pathology. Previous mutation analyses of the known FTLD genes—MAPT, PGRN, PSEN1, VCP, and CHMP2B—identified 12 mutations (10%) in the patients with FTLD, and screening of the known ALS genes SOD1, ANG, and TARDBP—identified 4 mutations (9%) in the patients with ALS. In the FTLD-ALS patient group, no mutations in the FTLD or ALS genes were observed. As control population, we included 638 neurologically healthy community individuals. Descriptions of patient and control study populations are summarized in table 1.
Table 1 Characteristics of patient and control study populations
Standard protocol approvals, registrations, and patient informed consents.
All patients or their legal guardians gave written informed consent for participation in both the clinical and genetic studies. The clinical study protocol and the informed consent forms for patient ascertainment were approved by the Medical Ethics Committee of ZNA Middelheim, and University Hospitals Leuven, Belgium. The genetic study protocol and informed consent forms were approved by the Medical Ethics Committee of the University of Antwerp, Belgium. Patient relatives and community-dwelling control individuals were ascertained after written informed consent, within the frame of the medical ethical approved genetic study protocol. All samples received a unique identifier number and demographic, medical, and genetic data were stored in a centralized database. Restrictive access permissions were given to researchers and clinicians depending on their respective role in this study.
FUS sequencing.
All 15 FUS exons including intron-exon boundaries were sequenced. Total genomic DNA of patients and control individuals was prepared from peripheral blood or lymphoblast cell lines. Genomic DNA was PCR amplified using primers designed by ExonPrimer as available trough the UCSC Genome Browser (table e-1 on the Neurology® Web site at www.neurology.org). PCR amplicons were purified using the ExoSAP-IT kit (USB Corporation, Cleveland, OH) and sequenced in both directions using the BigDye Terminator Cycle Sequencing kit v3.1 (Applied Biosystems, Foster City, CA) on an ABI3730 automated sequencer (Applied Biosystems). Sequence variations were detected using the software package novoSNP25 and confirmed by visual inspection of the DNA sequence traces.
In silico sequence variant analysis.
PMUT26 was used to predict the impact of an amino acid substitution on the function of the protein. The effect of sequence variants on splice site function and the prediction of alternative splice sites were assessed by the programs FSPLICE (http://www.softberry.com), NetGene2,27 and NNSplice.28
RESULTS
We performed a systematic mutation analysis of all FUS exons on genomic DNA of 122 patients with FTLD and 15 patients with FTLD-ALS. In addition, we screened 47 patients with pure ALS. Two patient-specific missense mutations were detected, 1 in a patient with FTLD and 1 in a patient with ALS (figure and table 2). Further, our analyses identified in 2 neurologically healthy control individuals a GG deletion which was previously reported as pathogenic.
Figure FUS mutations in amyotrophic lateral sclerosis and frontotemporal lobar degeneration
(A) Schematic representation of reported FUS mutations relative to the gene structure and the protein's functional domains. Mutations identified in the present study are highlighted in bold. QGSY-rich = glutamine, glycine, serine, tyrosine–rich region; G-rich = glycine-rich region; NES = nuclear export signal; RRM = RNA recognition motifs; RGG-rich = arginine, glycine–rich region; Zn F = zinc finger. (B) Sequence chromatograms of FUS mutations identified in a Belgian patient with frontotemporal lobar degeneration (c.760A>G, M254V) and a Belgian patient with amyotrophic lateral sclerosis (c.1562G>A, R521H) and alignment of FUS homologues displaying evolutionary conservation of residues M254 and R521 across species.
Table 2 Clinical features of FUS mutation carriers
FUS M254V in a patient with FTLD.
A single nucleotide change in exon 6, c.760A>G, was identified in a patient with FTLD predicting a methionine to valine substitution at codon 254 (M254V). We further sequenced exon 6 in 638 healthy elderly control individuals (mean age at inclusion 62.1 years; SD 15.5 years). This analysis did not identify any individual carrying M254V, suggesting that the M254V mutation is associated with FTLD. Multiple alignments of FUS homologues of different species indicated that M254V altered a highly conserved amino acid residue (figure). In addition, alignment of sequences of Ewing sarcoma breakpoint region 1 protein (EWS), which belongs together with FUS to the RRM TET family,29 also revealed conservation of residue M254, further underpinning its functional relevance (data not shown). In silico analysis by PMUT, a software program that allows the prediction of the pathogenic effect of missense mutations based on protein conservation and conformation,26 indicated that M254V is most likely pathogenic (output = 0.622; >0.5 predicts a pathologic mutation). Previous mutation analyses of MAPT, PGRN, VCP, and CHMP2B in this patient excluded causal mutations.
The patient displayed first aberrant behavior and personality changes at the age of 52 years. An FDG-PET scan confirmed the diagnosis of FTLD with decreased tracer uptake bilaterally frontal and temporal, most pronounced at the right side. At her last medical examination, at age 55 years, there were no clinical signs of lower motor neuron disease. By that time, the patient had developed slight extrapyramidal rigidity. Inquiry for family history of neurodegenerative brain diseases revealed 1 maternal uncle who had developed dementia at a later age.
FUS R521H in a patient with ALS.
A second nonsynonymous substitution, arginine to histidine at residue 521 (R521H), was identified in a patient with ALS. This mutation had already previously been linked to ALS in multiple affected members of 3 families and was absent in 1,846 control individuals.11,12 We additionally excluded this variation in 180 control individuals. No pathogenic mutations had been detected in this patient in the SOD1, TARDBP, and ANG genes.
The patient experienced first symptoms of pain and fatigue in the left leg at age 33 years. Her symptoms progressed rapidly over a period of 5 months to involve paresis of left and right limbs and difficulties with swallowing. Needle EMG testing at this time revealed signs of active denervation in all 4 limbs, most pronounced in the 2 legs. Family history was indicative of autosomal dominant inheritance: her mother was diagnosed with ALS at age 60 years, her grandmother at age 50 years, and 2 more siblings of her mother were reported to have ALS.
G-insertions/deletions in the FUS G-rich region.
Screening of FUS exons 5 and 6 in 638 control individuals revealed a GG deletion in exon 5 in the G-rich region of FUS (G174_G175delGG; figure, table e-2). This mutation was previously suggested to be pathogenic in patients with ALS. At the gDNA level, the GG deletion presents as a 6 base pair deletion located near the exon 5 splice donor site. Prediction of splice sites (FSPLICE, http://www.softberry.com, NetGene227 and NNSplice28) revealed with high reliability the use of an alternative donor site, 6 base pairs upstream leading to the deletion of 2 glycines. This GG deletion was present in 2/638 control individuals, aged 70 and 37 years. An additional GGG-deletion and a G-insertion in the G-rich region of FUS were also observed in 3 control individuals and 1 control individual, respectively (table e-2).
DISCUSSION
Recently, a new player was introduced in the FTLD-ALS disease spectrum with the identification of FUS mutations in patients with familial ALS.11,12 To determine whether this newly identified ALS gene could have a role in FTLD etiology, we performed a genetic mutation screen of FUS in 122 patients with FTLD and 15 patients with FTLD and ALS.
We detected 1 patient with FTLD with a novel FUS missense mutation, M254V, located in exon 6 of FUS. The patient was diagnosed with behavioral variant FTD and further clinical follow-up showed no signs of lower motor neuron disease. In the initial FUS reports, the majority of the missense mutations (12/13) were clustering in the C-terminus of the protein except for 1 in exon 6, R244C. Therefore, the question arises whether these rarer exon 6 variants have biologic relevance to the disease. There is, however, genetic evidence that supports a potential pathogenic role for M254V. First, this mutation was absent in a 638 control individuals (mutant allele frequency <0.078%). Second, multiple alignments of FUS homologues and paralogues showed that the M-residue at codon 254 is strongly conserved throughout evolution. Third, in silico analysis predicted a likely pathogenic effect of M254V on FUS functioning. Finally, mutations in known FTLD genes—MAPT, PGRN, VCP, and CHMP2B—were excluded in the FUS M254V mutation carrier. On the other hand, the family history data that could be collected from this patient were not compelling. One maternal uncle developed dementia at a later age; however, both parents are currently still alive and asymptomatic. DNA of the parents for mutation testing could not be obtained. If pathogenic, this mutation must either have arisen de novo or is not fully penetrant. Reduced penetrance was demonstrated in an ALS family segregating FUS R521G.11 Possibly, some FUS mutations act as a susceptibility factor rather than a fully penetrant mutation in developing neurodegenerative disease, including FTLD.30,31 Immunohistochemistry will be needed to allow a definite classification of the brain pathology in this patient with FTLD and will provide more insight in the biologic relevance of FUS M254V.
We also included 47 patients with a classic ALS phenotype in the mutational analysis, of which 18 patients had a positive family history, and identified the known R521H mutation in 1 familial ALS patient (1/18 or 5.6%). Familial history was conforming to an autosomal dominant inheritance of the disease. We noted variable ages of onset of 33, 50, and 60 years, indicating that other genetic or environmental modifying factors could be implicated in the disease development. There was no indication of cognitive deficits in any of the patients in this family. In the group of patients with FTLD-ALS (n = 15) we did not find any mutations in FUS, although admittedly the study population was small.
The majority of FUS mutations linked to ALS were missense mutations, except for 2 insertion/deletion mutations in the G-rich region of FUS.11 The authors found a GG deletion in 3 related patients with ALS as well as a GG insertion within the same glycine stretch in 1 patient with familial ALS. The GG insertion and deletion were excluded in 176 control individuals. In our study, however, sequencing of 638 control individuals revealed the GG deletion in 2 healthy individuals without clinical evidence of neurodegenerative disease. These GG-insertions/deletions are located in a G10-stretch of the G-rich region of FUS, a region that is not strongly conserved in homologues of closely related organisms. Moreover, we observed similar insertions/deletions of G-residues in the G-rich domain in 4 other control individuals. Together, our findings suggest that small G-insertions/deletions in this region may well be tolerated.
At this point it is difficult to estimate the exact contribution of FUS in FTLD genetic etiology, as uncertainty still exists about the true pathogenicity of M254V identified here. As more FTLD cohorts will be analyzed, the impact of FUS in FTLD will become clearer. Considering the structural and functional parallel that exists between TDP-43 and FUS,13,14 it is noteworthy that although TDP-43 inclusions are a major pathologic hallmark in patients with ALS and patients with FTLD,4–7 dominant mutations in TARDBP are primarily observed in pure ALS at one end of the FTLD-ALS spectrum.15–18 Recently, a few publications reported that the phenotype of TARDBP mutations may occasionally also encompass FTLD.19–21 The same might possibly hold for FUS. It will be interesting to see if the fraction of patients with FTLD with ubiquitin-positive but TDP-43-negative brain pathology (denoted FTLD-UPS and about 10%–20% of FTLD-U32–35) will display similar FUS neuropathology as observed in the FUS-positive patients with ALS. Our series included 2 patients with FTLD-UPS pathology but they were negative for FUS mutations.
ACKNOWLEDGMENT
The authors thank the patients for their cooperation in this study, the personnel of the Genetic Service Facility of the VIB–Department of Molecular Genetics (http://www.vibgeneticservicefacility.be), and the Antwerp Biobank of the Institute Born-Bunge (IBB).
DISCLOSURE
Dr. Van Langenhove, Dr. van der Zee, and Dr. Sleegers report no disclosures. Dr. Engelborghs serves on a scientific advisory board of Janssen-Cilag and UCB; and serves on the editorial advisory boards of Clinical Neurology and Neurosurgery and Current Medical Literature–Neurology. Dr. Vandenberghe serves on the editorial board of Frontiers in Neuroscience and receives research support from GE Healthcare, Wyeth, Pfizer Inc., Eli Lilly and Company, and Medivation, Inc. Dr. Gijselinck, M. Van den Broeck, M. Mattheijssens, K. Peeters, Dr. De Deyn, Dr. Cruts, and Dr. Van Broeckhoven report no disclosures.
Footnotes
-
Editorial, page 354
Supplemental data at www.neurology.org
Study funding: This study was partly funded by the Interuniversity Attraction Poles (IAP) program P6/43 of the Belgian Science Policy office, the Foundation for Alzheimer Research (SAO/FRMA), a Methusalem excellence grant of the Flemish Government, the Fund for Scientific Research–Flanders (FWO-V), the Institute for the Promotion of Innovation through Science and Technology in Flanders (IWT-V), the Special Research Fund of the University of Antwerp, and the Katholieke Universiteit Leuven, Belgium. T.V.L. is holder of a PhD fellowship of the IWT-V. The FWO-V provided a postdoctoral fellowship to J.v.d.Z. and K.S.
Disclosure: Author disclosures are provided at the end of the article.
Received July 15, 2009. Accepted in final form October 26, 2009.
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